| # | # w/o bonuses | Rider | GC time + bonuses | Total bonuses | |
|---|---|---|---|---|---|
| 1 | 1 | - | MAYO Iban | 29:27:15 | - |
| 2 | 2 | - | HAMILTON Tyler | 29:27:51 | - |
| 3 | 3 | - | SEVILLA Óscar | 29:28:29 | - |
| 4 | 4 | - | ARMSTRONG Lance | 29:29:15 | - |
| 5 | 5 | - | MERCADO Juan Miguel | 29:29:47 | - |
| 7 | 6 | ▲1 | RASMUSSEN Michael | 29:29:54 | - |
| 6 | 7 | ▼1 | GUTIÉRREZ José Enrique | 29:30:01 | 10 |
| 8 | 8 | - | LEIPHEIMER Levi | 29:30:48 | - |
| 9 | 9 | - | PEREIRO Óscar | 29:31:14 | 1 |
| 10 | 10 | - | LANDALUZE Iñigo | 29:31:17 | - |
| 11 | 11 | - | MONCOUTIÉ David | 29:31:40 | - |
| 12 | 12 | - | AZEVEDO José Bento | 29:32:01 | - |
| 13 | 13 | - | GOUBERT Stéphane | 29:32:51 | - |
| 14 | 14 | - | SASTRE Carlos | 29:32:56 | - |
| 15 | 15 | - | LANDIS Floyd | 29:33:33 | - |
| 16 | 16 | - | MARTÍNEZ Egoi | 29:34:27 | - |
| 17 | 17 | - | LÖFKVIST Thomas | 29:35:22 | - |
| 18 | 18 | - | BELTRÁN Manuel | 29:36:30 | - |
| 19 | 19 | - | VOECKLER Thomas | 29:37:56 | - |
| 20 | 20 | - | BOTCHAROV Alexandre | 29:38:05 | - |