| # | # w/o bonuses | Rider | GC time + bonuses | Total bonuses | |
|---|---|---|---|---|---|
| 1 | 1 | - | LANDIS Floyd | 89:39:30 | - |
| 1 | 2 | ▼1 | PEREIRO Óscar | 89:40:27 | - |
| 2 | 3 | ▼1 | KLÖDEN Andreas | 89:40:59 | - |
| 3 | 4 | ▼1 | SASTRE Carlos | 89:42:43 | - |
| 4 | 5 | ▼1 | EVANS Cadel | 89:44:38 | - |
| 5 | 6 | ▼1 | MENCHOV Denis | 89:46:36 | - |
| 6 | 7 | ▼1 | DESSEL Cyril | 89:48:11 | - |
| 7 | 8 | ▼1 | MOREAU Christophe | 89:49:07 | - |
| 8 | 9 | ▼1 | ZUBELDIA Haimar | 89:51:35 | - |
| 9 | 10 | ▼1 | ROGERS Michael | 89:54:37 | - |
| 10 | 11 | ▼1 | SCHLECK Fränk | 89:57:16 | - |
| 11 | 12 | ▼1 | CUNEGO Damiano | 89:58:49 | - |
| 13 | 13 | - | LEIPHEIMER Levi | 89:58:52 | - |
| 13 | 14 | ▼1 | BOOGERD Michael | 89:59:16 | - |
| 14 | 15 | ▼1 | FOTHEN Markus | 89:59:27 | - |
| 15 | 16 | ▼1 | CAUCCHIOLI Pietro | 90:00:42 | - |
| 16 | 17 | ▼1 | VALJAVEC Tadej | 90:05:55 | - |
| 17 | 18 | ▼1 | RASMUSSEN Michael | 90:08:03 | - |
| 18 | 19 | ▼1 | AZEVEDO José Bento | 90:17:38 | - |
| 19 | 20 | ▼1 | BRUSEGHIN Marzio | 90:22:35 | - |
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