| 1 | 2012-06-09 | 34 | | Stage 6 | Saint-Alban-Leysse - Morzine | 167.5 | 300 | 4158 |
| 2 | 2012-06-10 | 38 | | Stage 7 | Morzine - Châtel | 124.5 | 170 | 2375 |
| 3 | 2013-06-07 | 44 | | Stage 6 | La Léchère - Grenoble | 143 | 127 | 2207 |
| 4 | 2013-06-02 | 83 | | Stage 1 | Champéry - Champéry | 121 | 176 | 2582 |
| 5 | 2012-06-08 | 88 | | Stage 5 | Saint-Trivier-sur-Moignans - Rumilly | 186.5 | 121 | 3216 |
| 6 | 2013-06-09 | 89 | | Stage 8 | Sisteron - Risoul | 152 | 254 | 3449 |
| 7 | 2012-06-05 | 90 | | Stage 2 | Lamastre - Saint-Félicien | 160 | 124 | 3002 |
| 8 | 2012-06-04 | 106 | | Stage 1 | Seyssins - Saint-Vallier | 187 | 85 | 2048 |
| 9 | 2013-06-05 | 106 | | Stage 4 (ITT) | Villars-les-Dombes - Parc des Oiseaux | 32.5 | 2 | 152 |
| 10 | 2012-06-06 | 110 | | Stage 3 | Givors - La Clayette | 167 | 65 | 2683 |
| 11 | 2013-06-04 | 117 | | Stage 3 | Ambérieu-en-Bugey - Tarare | 167 | 56 | 1525 |
| 12 | 2013-06-08 | 131 | | Stage 7 | Pont-de-Claix - Superdévoluy | 184 | 268 | 4693 |
| 13 | 2013-06-03 | 135 | | Stage 2 | Châtel - Oyonnax | 183 | 128 | 2533 |
| 14 | 2012-06-03 | 137 | | Prologue | Grenoble - Grenoble | 5.7 | - | 11 |
| 15 | 2013-06-06 | 141 | | Stage 5 | Grésy-sur-Aix - Valmorel | 139 | 185 | 2447 |
| 16 | 2012-06-07 | 155 | | Stage 4 (ITT) | Villié-Morgon - Bourg-en-Bresse | 53.5 | 10 | 399 |