Best time trial competitors based on the PCS time trial ranking.
| Pos. | Rider | Team | Points | Time trial ranking position |
|---|---|---|---|---|
| 1 | Nsengimana Jean Bosco | Benediction Excel Energy | 75 | 143 |
| 2 | Munyaneza Didier | Benediction Excel Energy | 35 | 342 |
| 3 | Mugisha Samuel | Dimension Data for Qhubeka | 33 | 375 |
| 4 | Manizabayo Eric | Benediction Excel Energy | 25 | 521 |
| 5 | Du Plooy Rohan | ProTouch | 20 | 598 |
| 6 | Basson Gustav | TEG Procycling Team | 20 | 614 |
| 7 | Julius Jayde | ProTouch | 16 | 724 |
| 8 | Konychev Alexander | Dimension Data for Qhubeka | 12 | 893 |