| # | # w/o bonuses | Rider | GC time + bonuses | Total bonuses | |
|---|---|---|---|---|---|
| 1 | 1 | - | MAYO Iban | 06:11:38 | - |
| 2 | 2 | - | HAMILTON Tyler | 06:11:39 | - |
| 3 | 3 | - | ARMSTRONG Lance | 06:11:40 | - |
| 4 | 4 | - | PEREIRO Óscar | 06:11:41 | 1 |
| 5 | 5 | - | ROGERS Michael | 06:11:44 | - |
| 6 | 5 | ▲1 | SEVILLA Óscar | 06:11:44 | - |
| 11 | 7 | ▲4 | LEFÈVRE Laurent | 06:11:48 | - |
| 12 | 8 | ▲4 | LEIPHEIMER Levi | 06:11:50 | - |
| 13 | 9 | ▲4 | HINCAPIE George | 06:11:51 | - |
| 15 | 9 | ▲6 | ASTARLOZA Mikel | 06:11:51 | - |
| 14 | 9 | ▲5 | JAKSCHE Jörg | 06:11:51 | - |
| 17 | 12 | ▲5 | RASMUSSEN Michael | 06:11:52 | - |
| 16 | 12 | ▲4 | LANDALUZE Iñigo | 06:11:52 | - |
| 7 | 12 | ▼5 | DESSEL Cyril | 06:11:52 | 6 |
| 8 | 15 | ▼7 | GUTIÉRREZ José Enrique | 06:11:57 | 10 |
| 18 | 15 | ▲3 | LÖFKVIST Thomas | 06:11:57 | - |
| 10 | 17 | ▼7 | O'GRADY Stuart | 06:11:58 | 10 |
| 9 | 17 | ▼8 | HUSHOVD Thor | 06:11:58 | 10 |
| 19 | 17 | ▲2 | MONCOUTIÉ David | 06:11:58 | - |
| 20 | 17 | ▲3 | GONZÁLEZ Santos | 06:11:58 | - |